To-Do Notes:
- Create a new version of this file under '_pages' (save this one as a works-in-progress archive)
- Create a tab on the sidebar for this page (and link other social media accounts to here instead of to 'about')
- Link to this page using hashtags on each of the individual article pages' headers.
- Use dusty old library / bookshelf as the featured image
This Archive curates my various articles and projects by topic. It contains works both finished and in-progress.
## Biology
**Individual Works:**
[Thermodynamics, Agency, & Living Systems](https://mundyreimer.github.io/blog/thermodynamics-agency-livingsystems)
[Some thoughts on the Free Energy Principle]()
[Analyzing Microbiome Data](https://towardsdatascience.com/analyzing-microbiome-data-320728b56b8e)
[Classifying Sepsis Patients with Reinforcement Learning](https://github.com/mundyreimer/RL-Sepsis-Prediction)
**Lindenmayer Systems Sequence**
[In the beginning was the Word: An Introduction to Lindenmayer Grammars with Python]()
[Evolving Lindenmayer Grammars: An Evolutionary Algorithmic Framework with Python]()
[God as Grand Geometer: Imposing Real-World Physico-Geometric-Botanical Constraints onto Lindenmayer Grammars]()
[Dendritic Structures in Nature, Part 1: Lindenmayer Grammars and Neural Networks]()
[Dendritic Structures in Nature, Part 2: Lindenmayer Grammars and Circulatory Sytems]()
[Isomorphic Analysis: Comparing L-Systems, Fractals, Cellular Automata, and Chaos]()
**Biological Circuits Sequence:**
[Book Discussion: Chapter 1 - Transcription Networks]() (book of Uri Alon)
[Book Discussion: Chapter 2 - Autoregulation, A Network Motif]()
## Cognitive Science
**Individual Works:**
[The Hyperbolic Geometry of Mental Space](https://mundyreimer.github.io/blog/hyperbolic-geometry-mental-space)
[Thermodynamics, Agency, & Living Systems](https://mundyreimer.github.io/blog/thermodynamics-agency-livingsystems)
[On Representation, Notation, and Thought]()
[Some thoughts on the Free Energy Principle]()
**Gödel, Escher, Bach Sequence:**
[Chapter 1 Summary & Discussion]()
...etc
## Mathematics
**Individual Works:**
[Math to Code Converter Web App](https://mundyreimer.github.io/math2code_sphinx_docs/)
[Book Review: The Shape of Space - How to Visualize Surfaces and Three-Dimensional Manifolds by Jeffrey Weeks]()
[Book Review: The Four Pillars of Geometry by John Stillwell]()
[A Hyper Neat Argument]()
## Computer Science
**Genetic Algorithms with Python Sequence**
**Lindenmayer Systems Sequence**
["In the beginning was the Word": An Introduction to Lindenmayer Grammars with Python]()
[Evolving Lindenmayer Grammars: An Evolutionary Algorithmic Framework with Python]()
[God as Grand Geometer: Imposing Real-World Physico-Geometric-Botanical Constraints onto Lindenmayer Grammars]()
[Dendritic Structures in Nature, Part 1: Lindenmayer Grammars and Neural Networks]()
[Dendritic Structures in Nature, Part 2: Lindenmayer Grammars and Circulatory Sytems]()
[Isomorphic Analysis: Comparing L-Systems, Fractals, Cellular Automata, and Chaos]()
## Physics
**Individual Works:**
[Book Review: The Shape of Space - How to Visualize Surfaces and Three-Dimensional Manifolds by Jeffrey Weeks]()
[A Hyper Neat Argument]()
## Linguistics
**Individual Works:**
[On Representation, Notation, and Thought]()
**Lindenmayer Systems Sequence**
["In the beginning was the Word": An Introduction to Lindenmayer Grammars with Python]()
[Evolving Lindenmayer Grammars: An Evolutionary Algorithmic Framework with Python]()
[Isomorphic Analysis: Comparing L-Systems, Fractals, Cellular Automata, and Chaos]()
## Philosophy
**Individual Works:**
[A Hyper Neat Argument]()
## Science Fiction
**Individual Works:**
[Book Review: Theory of Constraints & Kynes-style Analysis of Dune](https://mundyreimer.github.io/blog/theory-of-constraints-dune)
[Book Review: Perdido Street Station by China Miéville](https://mundyreimer.github.io/blog/book-review-perdidostreetstation)
[Book Review: The Quantum Thief by Hannu Rajaniemi]()
[Book Review: The Fractal Prince by Hannu Rajaniemi]()
[Book Review: The Causal Angel by Hannu Rajaniemi]()